Ok installed the P1 port in the controller. Troubleshooting though because Up / Down doesn't work now....

Also if you look at the middle of the system you can see the reset button (it's silver colored). You can also use an OR gate for switchless, but it just isn't the same when playing X-Men and you have to "reset the computer." Gawd that had me stuck forever.... lol
UPDATE: ok it works properly now, I found out that the onboard controls have to be disabled. At first I thought they didn't because everything worked fine. So here is how it works:
In the place of the brightness controlls is now a slide switch. Sliding to the right turns off the screen, and enables DB9 port. Sliding to the left enables screen and onboard controls. I figured if I am playing on the go I won't really need another controller hooked up, but at home if playing on the Big TV, save some battery and use a nice 6 Button controller.